FIRE

mal_arr10_TP_10_ALL.txt

Summary

FIRE has discovered 11 motifs from the query data, consisting of 11 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.[CGT]ACA[CG]AC.	5'			PDF	PNG	EPS
..[CT]GCAC[ACT][CGT]	5'			PDF	PNG	EPS
.[GT]ACACAA.	5'			PDF	PNG	EPS
.[AG]GTGT[ACG][AC].	5'			PDF	PNG	EPS
.AACACAT.	5'			PDF	PNG	EPS
.[ACT][GT][AC]GAC[AG].	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[AGT]C[AC][ACG]A[ACG]TG[CGT]	5'			PDF	PNG	EPS
[ACG]AC[ACT][AC][AG]G[AC].	5'			PDF	PNG	EPS
TAATATTA[CGT]	5'	Y		PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.