FIRE

mal_arr20_TP_20_ALL.txt

Summary

FIRE has discovered 6 motifs from the query data, consisting of 6 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.[AT][AT]AGACA.	5'			PDF	PNG	EPS
[AGT][CGT].[CT]GCAC.	5'			PDF	PNG	EPS
.ACACAC[AG][ACT]	5'			PDF	PNG	EPS
.[ACG]CATGC..	5'			PDF	PNG	EPS
[ACT][CGT][AG]CA[AG]CC.	5'		Y	PDF	PNG	EPS
.[AG]ACC[AG]A[ACG][ACG]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.