FIRE

mal_arr34_TP_36_ALL.txt

Summary

FIRE has discovered 10 motifs from the query data, consisting of 10 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.[AG].GTGTG[CT]	5'			PDF	PNG	EPS
.[CT].TGCAC.	5'			PDF	PNG	EPS
[ACT][ACG][ACT]AGACA.	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
.T[CT]AGAC[ACG][AGT]	5'			PDF	PNG	EPS
[CGT][AG][AGT]TGC[AG]C.	5'			PDF	PNG	EPS
[ACG][AC][AC][ACT]AG[GT]G[CT]	5'			PDF	PNG	EPS
.[AC][CT]T[ACG]TAGA	5'			PDF	PNG	EPS
[ACT][CGT][AG]CAACC[ACT]	5'		Y	PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.