FIRE

mal_arr35_TP_37_ALL.txt

Summary

FIRE has discovered 12 motifs from the query data, consisting of 12 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.T[AG]C[AG]CAC.	5'	Y		PDF	PNG	EPS
.ATGTGTA.	5'	Y		PDF	PNG	EPS
.[AC][AGT]AGACA.	5'			PDF	PNG	EPS
.[ACT][ACT]GTGCA.	5'			PDF	PNG	EPS
.ATATAGA.	5'			PDF	PNG	EPS
[ACT]TAC[AG]C[AC]A.	5'			PDF	PNG	EPS
.[AG][AG]C[AGT]C[AG]C[AG]	5'		Y	PDF	PNG	EPS
[AGT][AC][CGT]GTAG[AG][AGT]	5'			PDF	PNG	EPS
.[CT]CACAC[AG].	5'			PDF	PNG	EPS
[ACG][ACT]AG[CT]G[GT]C.	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.