FIRE

mal_arr37_TP_39_ALL.txt

Summary

FIRE has discovered 7 motifs from the query data, consisting of 7 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
[ACT][AT][AT]AGACA.	5'	Y		PDF	PNG	EPS
.[CGT].TGCAC.	5'			PDF	PNG	EPS
.ATGTGTA.	5'			PDF	PNG	EPS
[AG]C[AG][CG][AG]C[AG][ACG][ACG]	5'			PDF	PNG	EPS
.[CGT][AG]CA[AG]C[CT][AGT]	5'			PDF	PNG	EPS
.A.TGC[ACT]C.	5'		Y	PDF	PNG	EPS
A[CT]ATAGAA[ACT]	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.