FIRE

mal_arr40_TP_42_ALL.txt

Summary

FIRE has discovered 9 motifs from the query data, consisting of 9 from DNA and 0 from RNA.

DNA results

Figures

FIRE p-value matrix PDF PNG EPS

FIRE density matrix PDF PNG EPS

FIRE motif interaction matrix PDF PNG EPS

Motif maps

Motif	Location	Position    bias	Orientation bias	Maps
.[AG][AT]AGACA.	5'			PDF	PNG	EPS
.[ACG]C[AG]TGC[AC].	5'			PDF	PNG	EPS
[AGT][AGT][AGT]TGCAC[ACG]	5'			PDF	PNG	EPS
.[CT]AC[AG][CG][AG]C[ACG]	5'			PDF	PNG	EPS
.[CT][CT][AG]GAC[ACG].	5'			PDF	PNG	EPS
[GT][AG]CAAC[CG][AT].	5'		Y	PDF	PNG	EPS
.[AG]ACCAA[AGT][AGT]	5'			PDF	PNG	EPS
[AG]TATAGAA[ACT]	5'			PDF	PNG	EPS
.[AT][CT]GTATC.	5'			PDF	PNG	EPS

Additional information

Best GO enrichments for motifs

All GO enrichments for motifs

All motif occurrences of motifs predicted by FIRE, sorted by putative functionality

Reference

FIRE is a motif discovery and characterization program based on mutual information.