EXPT21.txt
Summary
FIRE has discovered 7 motifs from the query data, consisting of 6 from DNA and 1 from RNA.
Combined DNA and RNA results
- Figures
- FIRE p-value matrix PDF PNG EPS
- FIRE density matrix PDF PNG EPS
- FIRE motif interaction matrix PDF PNG EPS
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- Motif maps
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Motif Location Position
biasOrientation
biasMaps .[ACG]CGTGA[AC][AC] 5' Y Y PDF PNG EPS .[AG]G[AC][AG]CGC[AGT] 5' PDF PNG EPS [GT]CG[ACG][GT]A[AC]C[ACG] 5' PDF PNG EPS .AAUAAA[GU]. 3'UTR Y Y PDF PNG EPS [ACG]AA[GT]CGAT. 5' PDF PNG EPS .CCTGCC[CGT][AG] 5' PDF PNG EPS [ACT]CACTC[CG]G[AT] 5' PDF PNG EPS
Additional information for DNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Additional information for RNA motifs
- Best GO enrichments for motifs
- All GO enrichments for motifs
- All motif occurrences of motifs predicted by FIRE, sorted by putative functionality
Reference
FIRE is a motif discovery and characterization program based on mutual information.